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Publications

Selected publications where part of the work was done at Proteomics Core facility

2014

Manuscript under submission
Comparative Pathogenicity of Bacterial Strains in vitro: From Genomics to Mass Spectrometry-Based Proteomics
Kaisa Thorell1,2, Roger Karlsson3,4, Shaghayegh Hosseini1, Carina Sihlbom5, Anders Karlsson3, Intawat Nookaew1,6,*
1Department of Chemical and Biological Engineering, Chalmers University of Technology, Gothenburg, 412 96, Sweden, 2Department of Microbiology and Immunology, University of Gothenburg, Sweden, 3Nanoxis Consulting AB, Lennart Torstenssonsgatan 5, SE-40016 Gothenburg, Sweden, 4Department of Clinical Bacteriology, Sahlgrenska University Hospital, Guldhedsgatan 10A, 41346 Gothenburg, Sweden, 5Proteomics Core Facility, Sahlgrenska Academy of the University of Gothenburg, Medicinaregatan 7A, Gothenburg, 41390, Sweden, 6Comparative Genomics group, Bioscience Division, Oak ridge National Laboratory, Oak ridge, Tennesse 37831, USA

Journal of Proteome Research, 2014, submitted manuscript
Assignment of Saccharide Identities through Analysis of Oxonium Ion Fragmentation Pathways in LC-MS/MS of Glycopeptides
Adnan Halim1,2, Ulrika Westerlind3, Christian Pett3, Manuel Schorlemer3, Ulla Rüetschi1, Gunnar Brinkmalm4, Carina Sihlbom5, Johan Lengqvist5, Göran Larson1 and Jonas Nilsson1*
1Department of Clinical Chemistry and Transfusion Medicine, Institute of Biomedicine, University of Gothenburg, Gothenburg, Sweden. 2Present address: Copenhagen Center for Glycomics and Department of Cellular and Molecular Medicine, University of Copenhagen, Denmark. 3Gesellschaft zur Förderung der Analytischen Wissenschaften e.V. ISAS-Leibniz Institute for Analytical Sciences, Dortmund, Germany,4Department of Neurochemistry, Institute of Neuroscience and Physiology, University of Gothenburg, Gothenburg, Sweden 5Proteomics Core Facility, University of Gothenburg, Sweden.

Connective Tissue Research, 2014, submitted manuscript
An inflammatory equine model demonstrates dynamic changes of immune response and cartilage matrix molecule degradation in vitro with a relevance to human osteoarthritis.
Emilia Svala1,3*, Maria Löfgren1, Carina Sihlbom2, Ulla Rüetschi3, Anders Lindahl3, Stina Ekman1, and Eva Skiöldebrand1,3 Major contributor: the late Dick Heinegård4
1Division of Pathology, Pharmacology and Toxicology, Department of Biomedical Sciences
and Veterinary Public Health, Swedish University of Agricultural Sciences, Uppsala, Sweden 2Proteomics Core Facility, Sahlgrenska Academy, Gothenburg University, Gothenburg, Sweden 3Department of Clinical Chemistry and Transfusion medicine, Institute of Biomedicine, Sahlgrenska University Hospital, Gothenburg University, Gothenburg, Sweden 4Department of Clinical Sciences, Section for Rheumatology, Molecular Skeletal Biology, Lund University, Lund, Sweden.

Acta Biomaterialia Manuscript Number: AB-14-788R1, Accepted
Towards development of a bioengineered uterus: comparison of different protocols for rat uterus decellularization.
Hellström M*1, El-Akouri RR1, Sihlbom C2, Olsson B2, Lengqvist J2 Bäckdahl H5, Johansson BR3, Olausson M4, Sumitran-Holgersson S4, Brännström M1
1Laboratory for Transplantation and Regenerative Medicine, Dept. of Obstetrics and Gynecology, Sahlgrenska Academy, Gothenburg University, Sweden.
2Proteomics Core Facility, Gothenburg University, Sweden
3Electron microscopy unit, Gothenburg University, Sweden
4Dept. of Surgery, Sahlgrenska Academy, Gothenburg University, Sweden.
5SP

Journal of Proteome Research, 2014, under revision
Proteomics of nasal exosomes in healthy and asthma - immune cell trafficking induced by nasal exosomes in relation to their proteome
Authors: Cecilia Lässer1§*, Serena E O’Neil, Ganesh V Shelke1, Carina Sihlbom2, Sara Folkesson Hansson2, Yong Song Gho3, Bo Lundbäck1 and Jan Lötvall1*.

1Krefting Research Centre, Institute of Medicine at the Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden. 2Proteomics Core Facility, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden. 3Department of Life Sciences, Pohang University of Science and Technology, Pohang, Republic of Korea

MCP Papers in Press. Published on July 3, 2014 as Manuscript M113.032276
Quantitative proteomic analysis reveals metabolic alterations, calcium dysregulation and increased expression of extracellular matrix proteins in laminin α2 chain-deficient muscle
Bruno Menezes de Oliveira*#, Cintia Y. Matsumura*#ǁ, Cibely C. Fontes-Oliveira#, Kinga I. Gawlik#, Helena Acosta§, Patrik Wernhoff# and Madeleine Durbeej#
#Department of Experimental Medical Science, Unit of Muscle Biology, Lund University, BMC B12, 221 84 Lund, Sweden

PLoS One. 2014 Jul 24;9(7):e102901. doi: 10.1371/journal.pone.0102901. eCollection 2014.
Effects of Increased CO2 on Fish Gill and Plasma Proteome.
Bresolin de Souza K, Jutfelt F, Kling P, Förlin L, Sturve J.
Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg, Sweden.

Arch Toxicol. 2014 May 6. [Epub ahead of print]
Intracellular fibril formation, calcification, and enrichment of chaperones, cytoskeletal, and intermediate filament proteins in the adult hippocampus CA1 following neonatal exposure to the nonprotein amino acid BMAA.
Karlsson O, Berg AL, Hanrieder J, Arnerup G, Lindström AK, Brittebo EB.
Department of Pharmaceutical Biosciences, Uppsala University, Box 591, 751 24, Uppsala, Sweden

PLoS One. 2014 Apr 25;9(4):e96199. doi: 10.1371/journal.pone.0096199. eCollection 2014.
Tyrosine phosphorylation within the intrinsically disordered cytosolic domains of the B-cell receptor: an NMR-based structural analysis.
Rosenlöw J1, Isaksson L1, Mayzel M1, Lengqvist J2, Orekhov VY1.
1The Swedish NMR Centre, University of Gothenburg, Gothenburg, Sweden. 2Proteomics Core Facility at Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.

Biochim Biophys Acta. 2014 Feb;1844(2):398-405. doi: 10.1016/j.bbapap.2013.11.002.
LC-MS/MS characterization of combined glycogenin-1 and glycogenin-2 enzymatic activities reveals their self-glucosylation preferences.
Nilsson J1, Halim A2, Larsson E3, Moslemi AR1, Oldfors A1, Larson G2, Nilsson J4.

1Department of Pathology, Institute of Biomedicine, University of Gothenburg, Gothenburg, Sweden. 2Department of Clinical Chemistry and Transfusion Medicine, Institute of Biomedicine, University of Gothenburg, Gothenburg, Sweden. 3Department of Medical Chemistry and Cell Biology, Institute of Biomedicine, University of Gothenburg, Gothenburg, Sweden. 4Department of Clinical Chemistry and Transfusion Medicine, Institute of Biomedicine, University of Gothenburg, Gothenburg, Sweden.

J Natl Cancer Inst. 2014 Feb;106(2):djt439. doi: 10.1093/jnci/djt439.
Proteomic mucin profiling for the identification of cystic precursors of pancreatic cancer.
Jabbar KS, Verbeke C, Hyltander AG, Sjövall H, Hansson GC, Sadik R.
Affiliations of authors: Department of Medical Biochemistry, University of Gothenburg, Gothenburg, Sweden (KSJ, GCH); Department of Gastroenterology and Hepatology (KSJ, HS, RS) and Department of Surgery (AGH), Sahlgrenska University Hospital, Gothenburg, Sweden; Division of Pathology, Department of Laboratory Medicine, Karolinska Institute, Karolinska University Hospital, Stockholm, Sweden (CV)

Open Biol. 2014 Jan 22;4:130202. doi: 10.1098/rsob.130202.
A novel O-linked glycan modulates Campylobacter jejuni major outer membrane protein-mediated adhesion to human histo-blood group antigens and chicken colonization.
Mahdavi J1, Pirinccioglu N, Oldfield NJ, Carlsohn E, Stoof J, Aslam A, Self T, Cawthraw SA, Petrovska L, Colborne N, Sihlbom C, Borén T, Wooldridge KG, Ala'Aldeen DA.
School of Life Sciences, University of Nottingham, Nottingham NG7 2RD, UK.

2013

J Proteomics. Oct 2013
Development in biobanking workflow standardization providing sample integrity and stability
Malm J et al

Open Biol. 2013 Oct 9;3(10):130048. doi: 10.1098/rsob.130048.
Pro-inflammatory cytokines can act as intracellular modulators of commensal bacterial virulence.
Mahdavi J1, Royer PJ, Sjölinder HS, Azimi S, Self T, Stoof J, Wheldon LM, Brännström K, Wilson R, Moreton J, Moir JW, Sihlbom C, Borén T, Jonsson AB, Soultanas P, Ala'Aldeen DA.
School of Life Sciences, Molecular Bacteriology and Immunology Group, University of Nottingham, Nottingham NG7 2RD, UK.

PLoS ONE 8(6): e65831, 2013
Isobaric Tagging-Based Quantification for Proteomic Analysis: A Comparative Study of Spared and Affected Muscles from mdx Mice at the Early Phase of Dystrophy
Matsumura CY, Menezes de Oliveira B, Durbeej M, Marques MJ

Mol Cell Proteomics. 2013 Jun 18.
Interlaboratory Study on Differential Analysis of Protein Glycosylation by Mass Spectrometry: the ABRF Glycoprotein Research Multi-Institutional Study 2012.
Leymarie N, Griffin PJ, Jonscher K, Kolarich D, Orlando R, McComb M, Zaia J, Aguilan J, Alley WR, Altmann F, Ball LE, Basumallick L, Bazemore-Walker CR, Behnken H, Blank MA, Brown KJ, Bunz SC, Cairo CW, Cipollo JF, Daneshfar R, Desaire H, Drake RR, Go EP, Goldman R, Gruber C, Halim A, Hathout Y, Hensbergen PJ, Horn DM, Hurum D, Jabs W, Larson G, Ly M, Mann BF, Marx K, Mechref Y, Meyer B, Möginger U, Neusüss C, Nilsson J, Novotny MV, Nyalwidhe JO, Packer NH, Pompach P, Reiz B, Resemann A, Rohrer JS, Ruthenbeck A, Sanda M, Schulz JM, Schweiger-Hufnagel U, Sihlbom C, Song E, Staples GO, Suckau D, Tang H, Thaysen-Andersen M, Viner RI, An Y, Valmu L, Wada Y, Watson M, Windwarder M, Whittal R, Wuhrer M, Zhu Y, Zou C.

J Chromatography B 2013, 931, 84-89
Detection of ligand-receptor binding using microfluidic frontal affinity chromatography on proteoliposomes derived directly from native cell membranes.
K. Olesen, R. Karlsson, U. Lind, M. Davidson, A. Blomberg, A. Karlsson
Dept. of Chemistry and Molecular Biology, University of Gothenburg

Biotechnol Biofuels. 2013 Jul 15;6(1):101. doi: 10.1186/1754-6834-6-101.
Physiological adaptations of Saccharomyces cerevisiae evolved for improved butanol tolerance.
Ghiaci P1, Norbeck J, Larsson C.
Department of Chemical and Biological Engineering, System and Synthetic Biology, Chalmers University of Technology, Gothenburg, Sweden.

Science. 2013 Jun 14;340(6138):1330-3. doi: 10.1126/science.1238880. Epub 2013 May 16.
Targeting isoprenylcysteine methylation ameliorates disease in a mouse model of progeria.
Ibrahim MX, Sayin VI, Akula MK, Liu M, Fong LG, Young SG, Bergo MO.
Sahlgrenska Cancer Center, Department of Molecular and Clinical Medicine, Institute of Medicine, Sahlgrenska Academy, University of Gothenburg, S-41390 Gothenburg, Sweden.

Clin Proteomics. 2013 Apr 4;10(1):4. doi: 10.1186/1559-0275-10-4.
Potential tumor biomarkers identified in ovarian cyst fluid by quantitative proteomic analysis, iTRAQ.
Kristjansdottir B, Levan K, Partheen K, Carlsohn E, Sundfeldt K.
Institute of Clinical Sciences, Department of Obstetrics and Gynecology, University of Gothenburg, Gothenburg S-413 45, Sweden.

Clinical Laboratory 2013; 59:639-46
Serum Proteome Changes in HIV Infection
Haarburger D, Bergström J, and Pillay, TS
Division of Chemical Pathology, National Health Laboratory Service, University of Cape Town, South Africa, Proteomics Core Facility, Sahlgrenska Academy at the University of Gothenburg

J Pathol. 2013 Apr;229(5):719-28. doi: 10.1002/path.4166.
Enteroviruses and the pathogene-sis of type 1 diabetes revisited: cross-reactivity of enterovi-rus capsid protein (VP1) antibodies with human mitochondrial proteins.
Hansson SF, Korsgren S, Pontén F, Korsgren O.
Proteomics Core Facility, Sahlgrenska Academy at the University of Gothenburg

J Proteome Res. 2013 Feb 1;12(2):573-84. doi: 10.1021/pr300963h. Epub 2013 Jan 11.
LC-MS/MS characterization of O-glycosylation sites and glycan structures of human cerebrospinal fluid glycoproteins.
Halim A, Rüetschi U, Larson G, Nilsson J.
Department of Clinical Chemistry and Transfusion Medicine, Institute of Biomedicine, Sahlgrenska Academy at the University of Gothenburg, 413 45 Gothenburg, Sweden.

J Proteome Res. 2013 Jan 4;12(1):135-50
Chromosome 19 annotations with disease speciation: a first report from the Global Research Consortium.
Nilsson CL, Berven F, Selheim F, Liu H, Moskal JR, Kroes RA, Sulman EP, Conrad CA, Lang FF, Andrén PE, Nilsson A, Carlsohn E, Lilja H, Malm J, Fenyö D, Subramaniyam D, Wang X, Gonzales-Gonzales M, Dasilva N, Diez P, Fuentes M, Végvári Á, Sjödin K, Welinder C, Laurell T, Fehniger TE, Lindberg H, Rezeli M, Edula G, Hober S, Marko-Varga G.
Proteomics Core Facility, Sahlgrenska Academy at the University of Gothenburg
 

2012

PLoS One. 2012;7(11):e49335. doi: 10.1371/journal.pone.0049335. Epub 2012 Nov 9.
Proteomic analysis of the increased stress tolerance of saccharomyces cerevisiae encapsulated in liquid core alginate-chitosan capsules.
Westman JO, Taherzadeh MJ, Franzén CJ.
School of Engineering, University of Borås, Borås, Sweden ; Industrial Biotechnology, Chalmers University of Technology, Göteborg, Sweden.

Anal Chem. 2012 Jul 3;84(13):5582-8. doi: 10.1021/ac300519q. Epub 2012 Jun 13.
Microfluidic flow cell for sequential digestion of immobilized proteoliposomes.
Jansson ET, Trkulja CL, Olofsson J, Millingen M, Wikström J, Jesorka A, Karlsson A, Karlsson R, Davidson M, Orwar O.
Department of Chemical and Biological Engineering, Chalmers University of Technology, Göteborg, Sweden.

J Proteome Res. 2012 May 4;11(5):2710-20. doi: 10.1021/pr2010633. Epub 2012 Apr 11.
Strain-level typing and identification of bacteria using mass spectrometry-based proteomics.
Karlsson R, Davidson M, Svensson-Stadler L, Karlsson A, Olesen K, Carlsohn E, Moore ER.

Biochim Biophys Acta. 2012 Apr;1822(4):493-9.
Molecular pathogenesis of a new glycogenosis caused by a glycogenin-1 mutation.
Nilsson J, Halim A, Moslemi AR, Pedersen A, Nilsson J, Larson G, Oldfors A.
Department of Pathology, Institute of Biomedicine, University of Gothenburg, Gothenburg, Sweden.

J Proteome Res. 2012 Apr 11.
Strain-Level Typing and Identification of Bacteria Using Mass Spectrometry-Based Proteomics.
Karlsson R, Davidson M, Svensson-Stadler L, Karlsson A, Olesen K, Carlsohn E, Moore ER.
Nanoxis AB , Lennart Torstenssonsgatan 5, SE-40016, Gothenburg, Sweden.

PLoS ONE, 2012, 7(10), e46992.
Structural Characterization of Bacterioferritin from Blastochloris viridis.
Wahlgren, W. Y., Omran, H., Stetten, Von, D., Royant, A., van der Post, S., & Katona, G.

Mol Cell Biol. 2012 Mar 26.
Cyclin dependent kinase 8 regulates mitotic commitment in fission yeast.
Szilagyi Z, Banyai G, Davila Lopez M, McInerny CJ, Gustafsson CM.
Department of Medical Biochemistry and Cell Biology, University of Gothenburg, Sweden.

Exp Cell Res. 2012 Mar 10;318(5):653-61.
Fused in sarcoma (FUS) interacts with the cytolinker protein plectin: implications for FUS subcellular localization and function.
Thomsen C, Udhane S, Runnberg R, Wiche G, Ståhlberg A, Aman P.
Sahlgrenska Cancer Center, Department of Pathology, Sahlgrenska Academy at the University of Gothenburg, Box 425, 40530, Gothenburg, Sweden.

Clin Biochem. 2012 Mar;45(4-5):331-8.
Molecular microheterogeneity of prostate specific antigen in seminal fluid by mass spectrometry.
Végvári A, Rezeli M, Sihlbom C, Häkkinen J, Carlsohn E, Malm J, Lilja H, Laurell T, Marko-Varga G.
Clinical Protein Science & Imaging, Dept. of Measurement Technology and Industrial Electrical Engineering, Lund University, Lund, Sweden.

Clin Transl Sci. 2012 Feb;5(1):56-9. doi: 10.1111/j.1752-8062.2011.00372.x.
Discovery of a novel circulating biomarker in patients with abdominal aortic aneurysm: a pilot study using a proteomic approach.
Wallinder J, Bergström J, Henriksson AE.
Department of Surgery, Sundsvall County Hospital, Sundsvall, Sweden.

2011

Traffic, Volume 12, Number 6, June 2011 , pp. 740-753(14)
Quantitative Proteomics of Yeast Post-Golgi Vesicles Reveals a Discriminating Role for Sro7p in Protein Secretion
Forsmark, Annabelle1; Rossi, Guendalina2; Wadskog, Ingrid3; Brennwald, Pa-trick2; Warringer, Jonas; Adler, Lennart

J Proteomics. 2011 Dec 10;75(1):202-10. Epub 2011 Jun 23.
Bioinformatic strategies for unambiguous identification of prostate specific antigen in clinical samples.
Végvári A, Rezeli M, Häkkinen J, Sihlbom C, Carlsohn E, Malm J, Lilja H, Laurell T, Marko-Varga G.
Clinical Protein Science & Imaging, Dept. of Measurement Technology and Industrial Electrical Engineering, Lund University, Lund, Sweden.

Respir Res. 2011 Sep 22;12:124.
Network analysis of quantitative proteomics on asthmatic bronchi: effects of inhaled glucocorticoid treatment.
O'Neil SE, Sitkauskiene B, Babusyte A, Krisiukeniene A, Stravinskaite-Bieksiene K, Sakalauskas R, Sihlbom C, Ekerljung L, Carlsohn E, Lötvall J.
Krefting Research Centre, Department of Internal Medicine, University of Gothenburg, Sweden.

Mol Cell. 2011 Sep 2;43(5):823-33.
Life span extension and H2O2 resistance elicited by caloric restriction require the peroxiredoxin Tsa1 in Saccharomyces cerevisiae.
Molin M, Yang J, Hanzén S, Toledano MB, Labarre J, Nyström T.
CMB, University of Gothenburg, Medicinaregatan 9C, S-413 90 Göteborg, Sweden.

FEMS Microbiol Lett. 2011 Aug;321(2)
Purification and characterization of a soluble cytochrome c capable of delivering electrons to chlorate reductase in Ideonella dechloratans.
Bäcklund AS, Nilsson T.
Department of Chemistry and Biomedical Sciences, Karlstad University, Sweden.

J Invest Dermatol. 2011 Jul;131(7):1486-93. doi: 10.1038/jid.2010.422.
Caged fluorescent haptens reveal the generation of cryptic epitopes in allergic contact dermatitis.
Simonsson C, Andersson SI, Stenfeldt AL, Bergström J, Bauer B, Jonsson CA, Ericson MB, Broo KS.
Department of Chemistry, Dermatochemistry and Skin Allergy, University of Gothenburg, Gothenburg, Sweden.

The Journal of Biological Chemistry (2011) 286, 31915-31923
Glycosylation increases the thermostability of human aquaporin 10 protein
Öberg F, Sjöhamn J, Fisher G, Moberg A, Pedersen A, Neutze R, Hedfalk K.
Department of Chemistry, University of Gothenburg, Gothenburg, Sweden.

FEBS Lett. 2011 Jun 23;585(12):1753-8.
Thioredoxin-mediated reduction of the photosystem I subunit PsaF and activation through oxidation by the interaction partner plastocyanin.
Farkas D, Hansson O.
Department of Chemistry, University of Gothenburg, Gothenburg, Sweden.

PLoS One. 2011;6(8)
Identification of novel biomarkers in seasonal allergic rhinitis by combining proteomic, multivariate and pathway analysis.
Wang H, Gottfries J, Barrenäs F, Benson M.
The Unit for Clinical Systems Biology, University of Gothenburg, Gothenburg, Sweden.

Allergy. 2011 Jan;66(1):132-40.
A pathway-based approach to find novel markers of local glucocorticoid treatment in intermittent allergic rhinitis.
Wang H, Chavali S, Mobini R, Muraro A, Barbon F, Boldrin D, Aberg N, Benson M.
The Unit for Clinical Systems Biology, University of Gothenburg, Gothenburg, Sweden.

2010

Vaccine (2010) 1193-1200
Intranasal immunization with a proteoliposome-derived cochleate containing recombinant gD protein confers protective immunity against genital herpes in mice
Judith Del Campo, Madelene Lindqvist, Maribel Cuello, Malin Bäckström, Osmir Cabrerraa, Josefine Persson, Oliver Perez, Ali M. Harandi
Department of Microbiology and Immunology, Institute of Biomedicine, Sahlgrenska Academy, University of Gothenburg.

PLoS ONE (2010) 5, 10, 1-9.
Phosphorylated Nucleolin interacts with translationally controlled tumor protein during mitosis and with Oct4 during interphase in ES cells
H. Johansson, F. Svensson, R. Runnberg, T. Simonsson, S. Simonsson
Dept. of Medical Biochemistry and Cell Biology, University of Gothenburg.

Mass spectrometry for microbial proteomics; John Wiley and sons Ltd 2010, 157-174
Characterization of bacterial membrane proteins using a novel combination of lipid based protein immobilization technique with mass spectrometry
R. Karlsson, D. Chooneea, E. Carlsohn, V. Encheva, HN. Shah
Dept of Chemistry, University of Gotehnburg, Proteomics Core facility, Sahlgrenska Academy, University of Gothenburg.

Clinical Proteomics 2010, 6, 195-207
Membrane protein profiling of human islet of Langerhans using several extraction methods
S.F. Hansson, Å. Henriksson, L. Johansson, O. Korsgren, JW. Eriksson, H. Tornqvist, P. Davidsson
Dept. Oncology, Radiology and Clinical immunology, Uppsala University.

Cell cycle 9 (2010), 2160-2169
Translationally controlled tumor protein interacts with nucleophosmin during mitosis in ES cells.
H. Johansson, D. Vizlin-Hodic, T. Simonsson, S. Simonsson
Dept of Medical Biochemistry and Cell Biology University of Gothenburg.

Acta Oncologica 2010, 49, 63-69
A study of the expression of Cyclin E and its isoforms in tumor and adjacent mucosa, correlated to patient outcome in early colon cancer.
I. Corin, L. Larsson, J. Bergström, B. Gustavsson, K. Derwinger
Dept. Of Surgery sahlgrenska University hospital, Proteomics Core Facility, Sahlgrenska Academy, University of Gothenburg.

Experimental Cell research 316 (2010), 543-553
Subunits of the chaperonin CCT interacts with F-actin and influence cell shape and cytoskeletal assembly
Brackley, K and Grantham J
Dept of Cell and Molecular Biology, University of Gothenburg.

2009

Nature methods (2009), 6, 809-811
Enrichment of glycopeptides for glycan structure and attachment site identification
Jonas Nilsson, Ulla Rüetschi, Adnan Halim, Camilla Hesse, Elisabet Carlsohn, Gunnar Brinkmalm & Göran Larson
Department of Clinical Chemistry and Transfusion Medicine, Institute of Biomedicine, University of Gothenburg.

BMC Cell Biology (2009) 10:89
DDIT/CHOP and the sarcoma fusion oncoprotein FUS-DDIT3/TLS-CHOP bind cyclin-dependent kinase 2
Bento C, MK Andersson, P Åhman
Department of Pathology, University of Gothenburg.

Angew. Chem.Int. Ed. 2009, 48,1646-1649
Proteomic analysis of plasma membrane vesicles
B. Bauer, M. Davidson, O. Orwar
Dept. of Chemical and Biological Engineering, Chalmers University of Technology.

Ecotoxicology and Environmental Safety 72 (2009) 1985-1993
Proteomic studies in zebrafish liver cells exposed to the brominated flame retardants HBCD and TBBPA.
P. Kling, L. Frölin
Department of Zoology, University of Gothenburg.

FEMS Microbiol Lett 2009, 297 (87-94)
Identification of key proteins involved in the anammox reaction
R. Karlsson, A. Karlsson, O. Bäckman, BR Johansson, S. Hult
Dept. of Chemistry, Gothenburg University.

Journal of Proteome Research (2009)8, 3549-3557
Proteomic analysis of the two mucus layers of the colon barrier reveals that their main component, the muc2 mucin, is strongly bound to the Fcgbp protein
M, Johansson, K Thomsson, GC, Hansson
Department of Medical Biochemistry, University of Gothenburg.

Journal of Virology (2009) 1393-1401
Nuclear factor kB binds to Epstein-Barr virus LMP1 promotor and upregulates its expression
Johansson P, Jansson A, Ruetschi U, Rymo L
Department of Clinical Chemistry and Transfusion medicine, University of Gothenburg.

Nature Methods 6, 423 - 430 (2009)
A HUPO test sample study reveals common problems in mass spectrometry–based prote-omics
Alexander W Bell, Eric W Deutsch, Catherine E Au, Robert E Kearney, Ron Beavis, Salva-tore Sechi, Tommy Nilsson, John J M Bergeron & HUPO Test Sample Working Group7
Proteomics Core facility, University of Gothenburg.

Molecular Biology of the Cell (2009) 20, 780-790
Early stages of Golgi vesicle and tubule formation require diacylglycerol
Asp L Kartberg F, et al
Department of Medical and Clinical Genetics University of Gothenburg.

2008

Ecotoxicology and Environmental Safety 71 (2008) 319-327
Gender-specific proteomic responses in zebrafish liver following exposure to a selective mixture of brominated flame retardants.
P. Kling, A. Norman, PL. Andersson, L. Norrgren, l. Frölin
Department of Zoology, University of Gothenburg.

PNAS (2008) 105, 15064-15069
The inner of the two Muc2 mucin-dependent mucus layers in colon is devoid of bacteria
Johansson, M, Philipson, M, Peterson J, Velcich A, Holm, L and GC Hansson
Department of Medical Biochemistry, University of Gothenburg.

Thrombosis research (2008) 122, 271-281
Heterogeneous glycosylation patterns of human PAI-1 may reveal its cellular origin.
H. Brogrén, C. Sihlbom, K. Wallmark, M. Lönn, J. Deinum, L. Karlsson, S. Jern.
Clinical Experimental Research Laboratory Sahlgrenska University Hospital / Inst of Medicine University of Gothenburg.

Proteomics (2008) 8, 2735-2749
Proteomics in Trypanosoma cruzi-Location of novel proteins to various organelles
Ferella, M, Nilsson D, Darban, H, Rodrigues C, Bontempi E, Docampo R and Andersson B
Department of Cell and Molecular Biology, Karolinska Institutet.

Glycobiology, (2008) 11, 905-912
The β-galactoside binding immunomodulatory lectin galectin-3 reverses the desensitized state induced in neutrophils by the chemotactic peptide f-Met-Leu-Phe: role of reactive oxygen species generated by the NADPH-oxidase and inactivation of the agonist
Huamei Forsman, Emma Salomonsson, Karin Önnheim, Jennie Karlsson, Åse Björstad, Hakon Leffler, Johan Bylund, Anna Karlsson and Claes Dahlgren
Department of Rheumatology and Inflammation Research, Göteborg University.

Photosynth. Res. (2008) 96;37-50
Proteomic analysis of highly purified prolamellar bodies reveals their significance in
Chloroplast development.
Blomqvist LA, Rydberg M, Sundqvist C
Department of Plant and Environmental Sciences, University of Gothenburg.

Comparative Biochemistry and Physiology - Part B: Biochemistry & Molecular Biology 2008; 149:454-462.
Purification and properties of major midgut leucyl aminopeptidase of Morimus funereus (Coleoptera, Cerambycidae) larvae.
Bozić N, Ivanović J, Nenadović V, Bergström J, Larsson T, Vujcić Z.
Department of Biochemistry, University of Belgrade, Serbia

2007

Molecular & Cellular proteomics (2007) 708-716
Large scale identification of proteins, mucins and theiO-Glycosylation in the endocervical mucus during the menstrual cycle.
Andersch-Björkman Y, Thomsson K, Holmén J, Ekerhovd E and GC Hansson
Department of Medical Biochemistry, University of Gothenburg.

Proteomics (2007), 7, 194-205
Lipid raft proteome of human neutrophil azurophil granule.
E. Feuk-Lagerstedt, C. Movitz, S. Pellme, C. Dahlgren, A. Karlsson
Department of Rheumatology and Inflammation University of Gothenburg.

Lectins: Analytical Technologies (2007), 299-325
Proteomic techniques for functional identification of bacterial adhesins.
E. Carlsohn and CL. Nilsson
Proteomics Core facility, University of Gothenburg.

Current Opinion in cell Biology (2007) 19; 376-385
Organellar proteomics to create the cell map.
CE. Au, AW. Bell, A. Gilchrist, J. Hiding, T. Nilsson, JJM. Bergeron
Department of Medical and Clinical Genetics, University of Gothenburg
Proteomics Core facility, University of Gothenburg.

Ecotoxicology and Environmental Safety 68(2007)33-39
Proteomic analysis indicate induction of hepatic carbonyl reductase/20β-hydroxysteroid dehydrogenase B in rainbow trout exposed to sewage effluent.
E. Albertsson, P. Kling, L. Gunnarsson, D.G.J larsson, L. Frölin
Department of Zoology, University of Gothenburg.

 

 

Page Manager: Jörgen Bergström|Last update: 11/6/2014
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